So, I solved it. Here’s how I did for future lost people:
Using QGroundControl, I went to Parameters -> MAVLink and set
MAV_0_CONFIG = TELEM 1
Then I reset the Pixhawk card, went to Parameters -> Serial and the set parameter SER_TEL1_BAUD the desired baud rate (this parameter only appear if MAV_0_CONFIG is set up properly.
Having done all this, the port can now be accessed by the card’s operation system at: /dev/ttyS1