Px4/Pixhawk firmware compiling show the CMake Error in Eclipse IDE

The cmake “Eclipse/CDT4 - Ninja” project generator works well for me with Eclipse running on Ubuntu 15.10.
Builds work inside Eclipse and the C++ indexer seems to find all symbols which before were completely obfuscated by the use of C macros and auto-generated headers. I’d suggest running Ubuntu LTS in a VM instead of trying to make the build environment work in Windows.