I solved my problem and hope this solution can help others in the same situation.
The PixRacer R15 has 2 Magnetometers, and the GPS has 1.
I was disabling Mag0 and leaving the 2 on the board enabled. When the board would pull current the mags would bugger up giving errors on local and global positioning from the power boards EMI and result in several fail safes being triggered.
SOLUTION:
Disable the two onboard Mags (mag1 && mag2) and enable only the GPS mag(mag0) in the parameters.
I got this idea when finding the below post solutions.